Wingzer0
it might be interesting for the MC to go to Corelia., this planet will present several advantages for him in the future. The MC would prefer to turn to Garm Bel Iblis, he is the senator of Corelia and one of the few to oppose frontally to Palpatine, the system of corelia is a key system by its position or the ships that it can provide within the galaxy. Garm Bel Iblis one of the few able to put pressure on the chancellor. he refuses to involve him in the clone wars, and leads his system to isolationism. Once he became Emperor Palpatine tries to have him assassinated but he manages to escape and is presumed dead. The MC an also meet the members of the green enclave by explaining to them his opinion and his position with respect to the conflict and helping them once the empire is declared. Oonce the empire cries this one will chase all the force user groups (Church of the Force and others)
Injured clones are studied and have their situation defined according to the extent of their injuries. If it's just an amputated limb, they'll have cybernetic replacements. If longer healing is needed, the clone will be moved to a new location and terminated. Basically, a standing DNR order is on all clones. the MC could save all these clones and create his own fleet once they are cured and their chips removed. Some generals define clones as consumables, so we can also take into consideration that they don't waste their time trying to heal them (Pong Krell or Tarkin for example).